PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG029325t1
Common NameTCM_029325
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family Trihelix
Protein Properties Length: 401aa    MW: 44547.1 Da    PI: 8.8792
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG029325t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix53.18.4e-1723102273
          trihelix   2 WtkqevlaLiearremeerlrrgk........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrts 73 
                       Wt +e+++Liea++ ++er  +++          + +W++v ++++++g+ rs++qC++kw+nl ++ykk++e +++ ++
  Thecc1EG029325t1  23 WTVNETMVLIEAKKMDDERRMKKSgdsegrskPTELRWKWVEDYCWRKGCLRSQNQCNDKWDNLMRDYKKVREYQRRTAE 102
                       *************97777666532223333338899*************************************9998643 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.0391587IPR017877Myb-like domain
PfamPF138371.5E-1222103No hitNo description
PfamPF123161.2E-4202287IPR024580Dishevelled C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MHLVMADQGG NNIVMREYRK GNWTVNETMV LIEAKKMDDE RRMKKSGDSE GRSKPTELRW  60
KWVEDYCWRK GCLRSQNQCN DKWDNLMRDY KKVREYQRRT AETAEGNNNN NEGSYWEMEK  120
NARKEKNLPS NMLRQIYEHL EEVVEKKGIQ RVVAAGESGP NPNIPYVMDR PMTSVQPSLP  180
PLLQHQLPAA IPPAIALPLP ALPPLPPPTA APAPLVQPSP LPYAQPLPTV DSDTSEYSDS  240
PAKRRRRSGG NGEGTSGTAS ANNSNEVGTA ISKSASIIAE AIQASEEREE RRHRDLVSLH  300
ERRLKIEESR TEINKNGIDG LVAAINKLAN SILTLASHNN QSAPKNVRET LQQLGSDQYF  360
SGTGQRRPVN GSLNPEGCQW LTNLPKCHSG AIIGGSLVFS *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4562555e-70AM456255.2 Vitis vinifera contig VV78X217219.6, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007024867.10.0Homeodomain-like superfamily protein, putative
TrEMBLA0A061GK720.0A0A061GK72_THECC; Homeodomain-like superfamily protein, putative
STRINGPOPTR_0012s11820.11e-129(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34932662
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35640.16e-60Trihelix family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]